ipcoal
0.0.5
Installation
Effective population size (Ne)
Admixture
The Results Table (.df)
Infer gene trees
ipcoal
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Welcome to ipcoal’s documentation!
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Installation
Dependencies
Effective population size (Ne)
Simulate with low ILS
Simulate with high ILS
Simulate with variable Ne
Admixture
Initialize a tree
Define and draw admixture events
Simulate on the tree with admixture
Confirm admixture with ABBA-BABA calculations
The Results Table (.df)
Simulate data under a tree model
View the results table
Save the results table to disk
Filter based on stats
Write data for a subset of loci
Specify names for written loci
Infer gene trees
Simulate data under a tree model
Infer gene trees for each locus
Save the results table to disk
View the result table
Compare trees
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v: 0.0.5
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