Installation

Conda installation

ipcoal is available for Python 2.7 and 3.5 or greater. The simplest way to install it is with conda. Currently, we require a few different channels to pull in all dependencies, this will likely be simplified in the future. Please install with the following command:

conda install ipcoal -c conda-forge -c bioconda -c eaton-lab

Developers welcomed

We are interested in expanding the capabilities of ipcoal. If you are interested in joining as a developer please feel free to fork the repo from GitHub and join in the discussion on addressing tickets or developing new features.

Dependencies

• numpy

• pandas

• numba

• msprime (conda-forge)

• toytree (eaton-lab)

• seq-gen (bioconda)

• raxml (bioconda)

• mrbayes (bioconda)